Vladimir Mironov PostDoc

Norwegian University of Science and Technology

Department of Biology

Realfagbygget, DU2-141, Gløshaugen, Høgskoleringen 5

Research description Knowledge Management and Semantic Web Technologies


Finding gene regulatory network candidates using the gene expression knowledge base. Aravind Venkatesan, Sushil Tripathi, Alejandro Sanz de Galdeano, […], Vladimir Mironov, Martin Kuiper. 

Plants having improved growth characteristics and a method for making the same. Ana Isabel Sanz Molinero, Christophe Reuzeau, Yves Hatzfeld, Veronique Boudolf, Lieven De Veylder, Dirk Inze, Vladimir Mironov.

Using the relation ontology Metarel for modelling Linked Data as multi-digraphs. Ward Blondé, Erick Antezana, Vladimir Mironov, Stefan Schulz, Martin Kuiper, Bernard De Baets.

orthAgogue: an agile tool for the rapid prediction of orthology relations. Ole Kristian Ekseth, Martin Kuiper, Vladimir Mironov.

The Emergence of Semantic Systems Biology. Erick Antezana, Vladimir Mironov, Martin Kuiper.

Putting the Semantics in Systems Biology. Martin Kuiper, Aravind Venkatesan, Erick Antezana, Steven Vercruysse, Vladimir Mironov, Ward Blonde.

Towards an integrated knowledge system for capturing gene expression events. Aravind Venkatesan, Vladimir Mironov, Martin Kuiper.

Gauging triple stores with actual biological data. Vladimir Mironov, Nirmala Seethappan, Ward Blondé, Erick Antezana, Andrea Splendiani, Martin Kuiper.

Profiling of semantically annotated proteins. Jens Hollunder, Vladimir Mironov, E. Antezana, […], Martin Kuiper.

Reasoning with bio-ontologies: Using relational closure rules to enable practical querying. Ward Blondé, Vladimir Mironov, Aravind Venkatesan, Erick Antezana, Bernard De Baets, Martin Kuiper.

The RDF foundry: Call for an initiative to build enhanced RDF resources for biological data integration. Aravind Venkatesan, Ward Blondé, Erick Antezana, Mats Skillingstad, M Scott Marshall, Bernard de Baets, Vladimir Mironov, Martin Kuiper.

Semantic systems biology: Enabling integrative biology via semantic web technologies. Erick Antezana, Ward Blondé, Aravind Venkatesan, Bernard de Baets, Vladimir Mironov, Martin Kuiper. 

Flexibility and utility of the Cell Cycle Ontology. Vladimir Mironov, Erick Antezana, Mikel Egaña, Ward Blondé, Bernard  de Baets, Martin Kuiper, Robert Stevens.

ONTO-ToolKit: Enabling bio-ontology engineering via Galaxy. Erick Antezana, Aravind Venkatesan, Chris Mungall, Vladimir Mironov, Martin Kuiper.

Benchmarking triple stores with biological data. Vladimir Mironov, Nirmala Seethappan, Ward Blonde, Erick Antezana, Bjorn Lindi, Martin Kuiper.

BioGateway: A semantic systems biology tool for the life sciences. Erick Antezana, Ward Blondé, Mikel Egaña, Alistair Rutherford, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper.

The Cell Cycle Ontology: an application ontology supporting the study of cell cycle control. Erick Antezana, Mikel Egaña, Ward Blondé, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper.

Metarel: an Ontology to support the inferencing of Semantic Web relations within Biomedical Ontologies. Ward Blondé, Erick Antezana, Bernard De Baets, Vladimir Mironov, Martin Kuiper.

Biological knowledge management: The emerging role of the Semantic Web technologies. Erick Antezana, Martin Kuiper, Vladimir Mironov.

Structuring the life science resourceome for Semantic Systems Biology: lessons from the BioGateway project. Erick Antezana, Ward Blondé , Mikel Egaña, Alistair Rutherford, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper.

ONTO-PERL: An API for supporting the development and analysis of bio-ontologies. Erick Antezana, Mikel Egaña, Bernard De Baets, Martin Kuiper, Vladimir Mironov.

The Cyclin-Dependent Kinase Inhibitor Orysa;KRP1 Plays an Important Role in Seed Development of Rice. Rosa Maria BarrôcoAdrian PeresAnne-Marie DroualLieven De VeylderLe Son Long NguyenJoris De WolfVladimir MironovRindert PeerbolteGerrit T.S. BeemsterDirk InzéWillem F. BroekaertValerie Frankard.

A Cell-Cycle Knowledge Integration Framework. Erick Antezana, Elena Tsiporkova, Vladimir Mironov, Martin Kuiper.

Tuning the cell-cycle engine for improved plant performance. Gerrit TS Beemster, Vladimir Mironov, Dirk Inzé

Novel complexes of cyclin-dependent kinases and a cyclin-like protein from Arabidopsis thaliana with a function unrelated to cell division. Rosa Maria Barrôco, Lieven De Veylder, Zolt Magyar, Gilbert Engler, Dirk Inzé, Vladimir Mironov. 

Characterization of cis-acting element involved in cell cycle phase-independent activation of Arath;CycB1;1 transcription and identification of putative regulatory proteins. Séverine Planchais, Claudette Perennes, Nathalie Glab, Vladimir Mironov, Dirk Inzé, Catherine Bergounioux.

pMH11, a Tool for Gene Disruption and Expression Analysis in Azorhizobium caulinodans. Wim D’Haeze, Christa Verplancke, Vladimir Mironov, Marcelle Holsters.

A Plant-specific Cyclin-dependent Kinase Is Involved in the Control of G2/M Progression in Plants. Andrea Porceddu, Hilde Stals,  Jean-Philippe ReichheldGerda Segers, Lieven De VeylderRosa de Pinho BarrôcoPeter CasteelsMarc Van Montagu,, Dirk Inzé, Vladimir Mironov.

The fas locus of the phytopathogen Rhodococcus fascians affects mitosis of tobacco BY-2 cells. Wim Temmerman, Tita Ritsema, Carmen Simón-Mateo, Marc Van Montagu, Vladimir Mironov, Dirk Inzé, Koen Goethals, Marcelle Holster.

Cyclin-Dependent Kinases and Cell Division in Plants: The Nexus. Vladimir MironovLieven De VeylderMarc Van MontaguDirk Inzé.

Mutational analysis of two Arabidopsis thaliana cyclin-dependent kinases in fission yeast. Andrea Porceddua, Lieven De Veyldera, Jacky Hayles, Marc Van Montagu, Dirk Inzé, Vladimir Mironov.

Tobacco cultures transformed with cyclin-promoter-GUS constructs reveal a discrepancy between GUS mRNA levels and GUS protein activity upon leaving the stationary state. Orit Shaul, Vladimir Mironov, Marc Van Montagu, Dirk Inzé.

ARM1: applications for engineered resistance to plant-parasitic nematodes. Mansour Karimi, Andrea Porceddu, Vladimir Mironov, Marc Van Montagu, Dirk Inzé, Lieve Gheysen.

Regulation of cell division in plants: An Arabidopsis perspective. Vladimir Mironov, Marc Van Montagu, Dirk Inzé.

Two Arabidopsis Cyclin Promoters Mediate Distinctive Transcriptional Oscillation in Synchronized Tobacco BY-2 Cells. Orit Shaul, Vladimir Mironov, Sylvia Burssens, Marc Van Montagu, Dirk Inze.

High throughput RNase protection assay. Vladimir Mironov, Mark Van Montagu, Dirk Inzé.

Functional organization of the riboflavin biosynthesis operon from Bacillus subtilis SHGW. Vladimir Mironov, Alexander Kraev, Michael Chikindas, Boris Chernov, Anatoly Stepanov, Konstantin Skryabin.

Riboflavin operon of Bacillus subtilis: unusual symmetric arrangement of the regulatory region. Yuri Kil, Vladimir Mironov, Igor Gorishin, Rimma Kreneva, Daniel Perumov.

Economical sequencing of DNA with terminators. Alexander Kraev, Vladimir Mironov.

Electrophoretic behavior of d(GGAAAAAAGG)n, d(CCAAAAAACC)n, and (CCAAAAAAGG)n, and implications for a DNA bending model. R.A. Abagyan, Vladimir Mironov, B.K. Chernov, V.P. Chuprina, Anatoly Ulyanov.

The operon organization of genes for riboflavin biosynthesis in Bacillus subtilis. Vladimir Mironov, Michael Leonidas Chikindas, Alexander Kraev, A I Stepanov, K G Skriabin.